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How to draw a monocle5/29/2023 exportCDS: Export a monocle CellDataSet object to other popular single.estimate_t: Find the most commonly occuring relative expression value in.estimateSizeFactorsForMatrix: Function to calculate the size factor for the single-cell.estimateDispersionsForCellDataSet: Helper function to estimate dispersions.dispersionTable: Retrieve a table of values specifying the mean-variance.diff_test_helper: Helper function for parallel differential expression testing.differentialGeneTest: Test genes for differential expression.detectGenes: Detects genes above minimum threshold.detectBifurcationPoint: Calculate divergence times for branch-dependent genes.clusterGenes: Clusters genes by pseudotime trend.clusterCells: Cluster cells into a specified number of groups based on.CellTypeHierarchy: The CellTypeHierarchy class.cellPairwiseDistances-set: Sets the matrix containing distances between each pair of.cellPairwiseDistances: Get the matrix of pairwise distances between cells.CellDataSet-methods: Methods for the CellDataSet class.calILRs: Calculate the Instantaneous Log Ratio between two branches.calibrate_per_cell_total_proposal: Calibrate_per_cell_total_proposal.calABCs: Compute the area between curves (ABC) for branch-dependent.buildBranchCellDataSet: Build a CellDataSet that splits cells among two branches.branchTest: Test for branch-dependent expression.BEAM: Branched expression analysis modeling (BEAM).
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